Knexus, Proteometrics suite of mass spectrometry tools for proteomics
(members only).
GPM,
The Global Proteome Machine mass spectrum analysis system.
SSRCalc,
Version 3.X (2010) of the Sequence Specific Retention Calculator With Hydrophobicity Index.
BIRCH,
A resource for bioinformatics, operated on the Univ. of Manitoba Sun Unix system. BIRCH consists of a collection of programs and databases for molecular biology that are useable either through X-windows, the command line or through text-based menus.
Only freely-available programs have been incorporated into BIRCH.
SRS,
Lion Bioscience's multiple database search system. It is supplied by the NRC Canadian Bioinformatics Resource.
BLAST,
Provided by the NRC Canadian Bioinformatics Resource.
Open source informatics projects
X! Tandem: An open source
search engine for matching protein sequences with mass spectra;
the GPM: An open source
interface for generating and viewing information generated with X! Tandem;
GPMDB: A large scale repository
for proteomics information;
X! Protein Disulphide Linkage Modeler:
An open source project for for determining disulphide linkages in proteins, given a set of
protein digest peptide molecular masses.
